蒙特卡洛模拟退火与距离限制相结合的方法在多肽溶液构象分析中的应用

多维核磁共振技术的飞速发展议得其在生物大分子结构测定方面的应用已经达到可以与【射线晶体学并驾齐驱的地步．蛋白质结构堆积紧密，较适合于用核磁共振方法给出确定的结构．与蛋白质不同的是多肽的柔性较大，在溶液中可能存在多种构象，核磁共振实验给出的只是平均信息＊．利用核磁，（振数据构建分子结构模型常用的方法有距离几何、分子动力学等，在由核磁共振NOESZ得到的距离信息足够多时可以给出较好的结果问．由于多肽本身的特点：柔性较大，由核磁共振得到的距离信息较少等，利用距离几何、分子动力学方法进行构象搜索时容易陷入…     

Photophysical and structural impact of phosphorylated anions associated to lanthanide complexes in water

A new ligand, LC, bis-[(6'-carboxy-2,2'-bipyridine-6-yl)]phenylphosphine oxide, in which the tridentate 6-carboxy-2,2'-bipyridyl arms are directly linked to a phenylphosphine oxide fragment, has been synthesized. The corresponding [Ln.LC]Cl.xH2O complexes (Ln = Eu, x = 4, and Tb, x = 3) were isolated from solutions containing equimolar amounts of LC and hydrated LnCl3 salts and characterized by elemental analysis, mass spectrometry, and infrared spectroscopy. The interactions of the Eu complex with various anions (AMP(2-), ADP3-, ATP,4- HPO4(2-), and NO3-) were studied by titration experiments, using UV-vis, luminescence spectroscopy, and excited-state lifetime measurements. The results are in keeping with strong interactions with the ADP3-, ATP4-, and phosphate anions in TRIS/HCl buffer (0.01 M, pH = 7.0), as revealed by the determination of the conditional stepwise association constants. These values are higher than the one determined for ligand LB, bis[(6'-carboxy-2,2'-bipyridine-6-methyl-yl)]-n-butylamine (Delta log K approximately 1-2). The interaction of complexes [Ln.LB]+ and [Ln.LC]+ with nitrate, monohydrogenophosphate, methyl phosphate (MeP2-), methyldiphosphate (MeDP3-), and methyltriphosphate (MeTP4-) anions was investigated by means of quantum mechanical (QM) calculations. The results, combined with data on the photophysical impact of the sequential competitive binding of anions to the Eu complexes in water, suggest that LB is too flexible to ensure a good coordination pocket, while the molecular structure of ligand LC stabilizes both the formation of the lanthanide complexes and its adducts with ATP.     

Structural, Electronic, and Optical Properties of Noble Metal Clusters from First Principles

We examine low-energy isomeric forms, static polarizabilities, and optical absorption spectra of Ag _n , n = 2–8, and Au _n , n = 2–3, clusters using first principles computations within the static and time-dependent versions of the density functional theory. The noticeable decrease in the static polarizabilities of Ag₇ and Ag₈ compared to the values characteristic of Ag _n , n = 2–6, is correlated with the transition from two-dimensional to three-dimensional structures at n = 7. The optical spectra computed within the time-dependent local density approximation for the most stable structures are in good agreement with the available experimental data and the results of earlier theoretical studies. Optical spectra of higher-energy isomers typically present features that are not observed in the experimental spectra. The d electrons affect the spectra of noble metal clusters by quenching the oscillator strengths through screening of the s electrons and by getting directly involved in the excitations. Due to the larger s–d hybridization in Au compared to Ag, these effects are more pronounced in Au _n clusters.     

Modification of the luminescence properties of an Europium(III) Tris(β-diketonate) Complex by Inclusion in γ-cyclodextrin and 2,3,6-trimethyl-γ-cyclodextrin

A 1:1 inclusion compound between octakis(2,3,6-tri-O-methyl)-γ-cyclodextrin (TRIMEG) and the chelate complex Eu(NTA)₃·2H₂O (NTA=1-(2-naphthoyl)-3,3,3-trifluoroacetonate) was prepared and characterized by powder X-ray diffraction, thermogravimetric analysis and photoluminescence spectroscopy. The results were compared with those obtained for the corresponding native γ-CD adduct. Excitation and emission spectra were measured, and the lifetimes were determined for the Eu³⁺ first excited state (⁵D₀). The results indicate the presence of only one low-symmetry environment for the Eu³⁺ cations in the inclusion compounds. Encapsulation of the Europium complex in the two CDs increases the quantum efficiency of the ligand-to-metal energy transfer pathway, but the efficiency of the Eu³⁺ sensitization was significantly higher with TRIMEG as the host molecule. This may be related with the observation that the two hosts appear to have different influences on the Eu³⁺ coordination environments for the guest molecule.     

Synthesis and characterization of new strontium 4-carboxyphenylphosphonates

Several new strontium 4-carboxyphenylphosphonates, i.e., two modifications of Sr(HOOCC₆H₄PO₃H)₂, SrH(OOCC₆H₄PO₃)·H₂O, Sr₃(OOCC₆H₄PO₃)₂·4H₂O and Sr₃(OOCC₆H₄PO₃)₂·5.7H₂O were prepared and characterized by elemental analysis, thermogravimetry, X-ray powder diffraction and infrared spectroscopy. It was found that the compositions of these compounds depend on the acidity of the reaction medium. In addition, the presented compounds are interconvertible in dependence on pH. The position of the acid hydrogen atom in SrH(OOCC₆H₄PO₃)·H₂O was determined from the IR spectra of the studied compounds.The structure of the β modification of Sr(HOOCC₆H₄PO₃H)₂ was solved from its X-ray powder diffraction pattern using an ab initio method (the FOX program) with subsequent Rietveld refinement in the FULLPROF program. The compound is monoclinic, with the space group P2₁/c (No. 14), a=49.88(2), b=7.867(2), c=5.602(3) Å, β=128.68(2)°, and Z=4. It has a one-dimensional structure with an inorganic part built of SrO₈ distorted tetragonal antiprisms.     

The distribution coefficient of oil and curing agent in PP/EPDM TPV

The distribution coefficients of oil and curing agent in PP/EPDM TPV were calculated by measuring the melting point of the PP phase using differential scanning calorimetry (DSC). The PP/EPDM TPV was prepared by using a twin screw extruder and a peroxide curing agent was used. The peroxide induces the degradation of PP, resulting in the decrease of T_m. The oil in PP phase also decreases the Tm. Based on the T_m difference among pure PP and PP/EPDM TPV before and after extraction by cylcohexane, the calculated oil distribution coefficient is 0.537. The addition sequence of PP, oil, and curing agent has a significant effect on the T_m and the calculated curing agent distribution coefficient is 0.52. Both of the coefficients are less than 1. Based on the calculation of the two coefficients, a rationale design of thermoplastic vulcanizate (TPV) can be made by proper control of raw materials, addition sequence, and processing parameters. Copyright © 2007 John Wiley & Sons, Ltd.     

Rhenium(I)-induced cyclization of thiosemicarbazones derived from beta-keto esters

The reactions of methylacetoacetate and ethyl 2-methylacetoacetate thiosemicarbazones (H(2)L(A) and H(2)L(B), respectively) with [ReX(CO)(5)] and [ReX(CO)(3)(CH(3)CN)(2)] (X = Cl, Br) were explored under various experimental conditions. Besides the adducts fac-[ReX(CO)(3)(H(2)L)], in which the rhenium is coordinated to three carbonyl groups, the X anion, and the N,S-bidentate thiosemicarbazone ligand, the following complexes were also isolated: fac-[ReBr(CO)(3)(Hpyz(B))], the tetrameric complexes fac-[Re(pyz(A))(CO)(3)](4) and fac-[Re(pyz(B))(CO)(3)](4), and fac-[Re(pyz(B))(CO)(3)(H(2)O)] (where Hpyz(A) and Hpyz(B) are pyrazolones derived by cyclization of H(2)L(A) and H(2)L(B), respectively). The cyclization reactions were monitored by (1)H NMR spectroscopy and the complexes isolated were identified by elemental analysis, mass spectrometry, IR and (1)H NMR spectroscopy, and in some cases by X-ray diffractometry. The isolation and the full structural identification of the rather unusual fac-[ReBr(CO)(3)(Hpyz(B))], which contains the enol form of the pyrazolone ligand, affords new insight into the cyclization of thiosemicarbazones derived from beta-keto esters.     

Analysis of dinitro- and amino-nitro-toluenesulfonic acids in groundwater by solid-phase extraction and liquid chromatography–mass spectrometry

A reversed-phase LC–MS method with quadrupole-time of flight (QTOF) detection has been developed for the determination of four dinitro-toluenesulfonic acids and two amino-nitro-toluenesulfonic acids in groundwater. The analytes were separated by HPLC with 0.1% (v/v) formic acid as mobile phase modifier compatible with mass spectrometric detection. QTOF-MS analysis with negative ion electrospray ionization afforded good selectivity and sensitivity for analysis of the dinitro- and amino-nitro-toluenesulfonic acids. Structure elucidation and confirmation were accomplished by tandem mass spectrometry. Characteristic ions resulting from the loss of NO, NO₂, and SO₂ from the [M–H]^– ions were detected. An intense fragment ion at m/z 80 representing the [SO₃]^– ion was detected for all dinitro- and amino-nitro-toluenesulfonic acids. Solid-phase extraction using a co-polymer cartridge was developed for preconcentration of the analytes from water. Good recovery (>85%) was achieved when 0.1% formic acid was added into the water samples before extraction. Method detection limits ranged from 10 to 76 ng L^–1 for the targeted compounds when 10 mL water was analyzed. Groundwater samples collected from wells close to a former ammunition plant in Stadtallendorf, Germany, were analyzed for the dinitro- and amino-nitro-toluenesulfonic acids.     

Improved determination of flavour compounds in butter by solid-phase (micro)extraction and comprehensive two-dimensional gas chromatography

The practicability and potential of comprehensive two-dimensional gas chromatography (GC x GC) coupled to both conventional flame ionisation (FID) and time-of-flight mass spectrometric (TOF-MS) detection, were compared with those of conventional one-dimensional (1D) GC, with the determination of flavour compounds in butter as an application. For polar flavour compounds, which were collected from the aqueous fraction of butter by means of solid-phase extraction (SPE), it was found that GC x GC dramatically improves the overall separation. Consequently, quantification and preliminary identification based on the use of ordered structures, can be performed more reliably. The improvement effected by replacing 1D-GC by GC x GC is considerable also in the case of TOF-MS detection, as illustrated by the high match factors generally obtained during identification. GC x GC was also used successfully for the characterisation of volatile flavour compounds in the headspace of butter collected by solid-phase microextraction (SPME) and to study the effect of heat treatment on the composition of butter samples in more detail.     

Scanning electrochemical microscopy as a probe of Ag+ binding kinetics at Langmuir phospholipid monolayers

A new method has been developed for measuring local adsorption rates of metal ions at interfaces based on scanning electrochemical microscopy (SECM). The technique is illustrated with the example of Ag+ binding at Langmuir phospholipid monolayers formed at the water/air interface. Specifically, an inverted 25 microm diameter silver disc ultramicroelectrode (UME) was positioned in the subphase of a Langmuir trough, close to a dipalmitoyl phosphatidic acid (DPPA) monolayer, and used to generate Ag+ via Ag electro-oxidation. The method involved measuring the transient current-time response at the UME when the electrode was switched to a potential to electrogenerate Ag+. Since the Ag+/Ag couple is reversible, the response is highly sensitive to local mass transfer of Ag+ away from the electrode, which, in turn, is governed by the interaction of Ag+ with the monolayer. The methodology has been used to determine the influence of surface pressure on the adsorption of Ag+ ions at a phospholipid (dipalmitoyl phosphatidic acid) Langmuir monolayer. It is shown that the capacity for metal ion adsorption at the monolayer increased as the density of surface adsorption sites increased (by increasing the surface pressure). A model for mass transport and adsorption in this geometry has been developed to explain and characterise the adsorption process.